Leucobacter corticis sp. nov., isolated from symptomatic bark of Populus × euramericana canker.
Identifieur interne : 001317 ( Main/Exploration ); précédent : 001316; suivant : 001318Leucobacter corticis sp. nov., isolated from symptomatic bark of Populus × euramericana canker.
Auteurs : Yong Li [République populaire de Chine] ; Wei Fang [République populaire de Chine] ; Shou-Jiang Xie [République populaire de Chine] ; Xuqi Yang [République populaire de Chine] ; Lai-Fa Wang [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2017.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Actinomycetales (classification), Actinomycetales (génétique), Actinomycetales (isolement et purification), Amino-butyrates (composition chimique), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Glycolipides (composition chimique), Hybridation d'acides nucléiques (MeSH), Maladies des plantes (microbiologie), Paroi cellulaire (composition chimique), Phospholipides (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Techniques de typage bactérien (MeSH), Vitamine K2 (composition chimique), Écorce (microbiologie).
- MESH :
- composition chimique : Acides gras, Actinomycetales, Amino-butyrates, Glycolipides, Paroi cellulaire, Phospholipides, Vitamine K2.
- génétique : ADN bactérien, ARN ribosomique 16S, Actinomycetales.
- isolement et purification : Actinomycetales.
- microbiologie : Maladies des plantes, Populus, Écorce.
- Analyse de séquence d'ADN, Chine, Hybridation d'acides nucléiques, Phylogenèse, Techniques de typage bactérien.
English descriptors
- KwdEn :
- Actinomycetales (classification), Actinomycetales (genetics), Actinomycetales (isolation & purification), Aminobutyrates (chemistry), Bacterial Typing Techniques (MeSH), Cell Wall (chemistry), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (chemistry), Glycolipids (chemistry), Nucleic Acid Hybridization (MeSH), Phospholipids (chemistry), Phylogeny (MeSH), Plant Bark (microbiology), Plant Diseases (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Vitamin K 2 (chemistry).
- MESH :
- chemical , chemistry : Aminobutyrates, Fatty Acids, Glycolipids, Phospholipids, Vitamin K 2.
- chemistry : Cell Wall.
- classification : Actinomycetales.
- genetics : Actinomycetales, DNA, Bacterial, RNA, Ribosomal, 16S.
- isolation & purification : Actinomycetales.
- microbiology : Plant Bark, Plant Diseases, Populus.
- Bacterial Typing Techniques, China, Nucleic Acid Hybridization, Phylogeny, Sequence Analysis, DNA.
Abstract
A Gram-stain-positive, aerobic, non-motile, rod-shaped bacterial strain, designated 2C-7T, was isolated from symptomatic bark of a Populus × euramericana canker. Growth occurred between 10 and 37 °C and between pH 6 and 10, with optimal growth at 30 °C and pH 7.0-8.0. Growth was present under 0-8 % (w/v) salinity conditions (optimum 1-2 %). Growth occurred in the presence of 10 mM chromium (Cr6+). The major fatty acids (≥10 %) of the novel strain were anteiso-C15 : 0, anteiso-C17 : 0 and iso-C16 : 0. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phospholipid, glycolipid and two unknown lipids. The major respiratory quinone was menaquinone MK-11. The cell wall amino acids were 2,4-diaminobutyric acid, alanine, glutamic acid and glycine. Strain 2C-7T was most similar to Leucobacter celer subsp. celer NAL101T (97.2 % 16S rRNA gene sequence similarity), 'Leucobacter kyeonggiensis' F3-P9T (97.1 %) and Leucobacter chromiireducens L-1T (97.1 %). In the phylogenetic tree, the isolate formed a single distinct branch separate from those of L. celer subsp. celer NAL101T, 'L. kyeonggiensis' F3-P9T and Leucobacter chironomi DSM 19883T. The DNA-DNA hybridization values between the novel strain and the reference strains were lower than the accepted bacterial threshold level of 70 % for species delineation. The DNA G+C content of strain 2C-7T was 70.0 mol%. Based on the data, strain 2C-7T represents a novel species in the genus Leucobacter, for which the name Leucobacter corticis sp. nov. is proposed. The type strain is 2C-7T (=CFCC 11901T=KCTC 39643T).
DOI: 10.1099/ijsem.0.001934
PubMed: 28699860
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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ribosomique 16S (génétique)</term><term>Acides gras (composition chimique)</term><term>Actinomycetales (classification)</term><term>Actinomycetales (génétique)</term><term>Actinomycetales (isolement et purification)</term><term>Amino-butyrates (composition chimique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Chine (MeSH)</term><term>Glycolipides (composition chimique)</term><term>Hybridation d'acides nucléiques (MeSH)</term><term>Maladies des plantes (microbiologie)</term><term>Paroi cellulaire (composition chimique)</term><term>Phospholipides (composition chimique)</term><term>Phylogenèse (MeSH)</term><term>Populus (microbiologie)</term><term>Techniques de typage bactérien (MeSH)</term><term>Vitamine K2 (composition chimique)</term><term>Écorce (microbiologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Aminobutyrates</term><term>Fatty Acids</term><term>Glycolipids</term><term>Phospholipids</term><term>Vitamin K 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xml:lang="fr"><term>Actinomycetales</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Populus</term><term>Écorce</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term><term>Plant Diseases</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term><term>China</term><term>Nucleic Acid Hybridization</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Chine</term><term>Hybridation d'acides nucléiques</term><term>Phylogenèse</term><term>Techniques de typage bactérien</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A Gram-stain-positive, aerobic, non-motile, rod-shaped bacterial strain, designated 2C-7T, was isolated from symptomatic bark of a Populus × euramericana canker. Growth occurred between 10 and 37 °C and between pH 6 and 10, with optimal growth at 30 °C and pH 7.0-8.0. Growth was present under 0-8 % (w/v) salinity conditions (optimum 1-2 %). Growth occurred in the presence of 10 mM chromium (Cr6+). The major fatty acids (≥10 %) of the novel strain were anteiso-C15 : 0, anteiso-C17 : 0 and iso-C16 : 0. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phospholipid, glycolipid and two unknown lipids. The major respiratory quinone was menaquinone MK-11. The cell wall amino acids were 2,4-diaminobutyric acid, alanine, glutamic acid and glycine. Strain 2C-7T was most similar to Leucobacter celer subsp. celer NAL101T (97.2 % 16S rRNA gene sequence similarity), 'Leucobacter kyeonggiensis' F3-P9T (97.1 %) and Leucobacter chromiireducens L-1T (97.1 %). In the phylogenetic tree, the isolate formed a single distinct branch separate from those of L. celer subsp. celer NAL101T, 'L. kyeonggiensis' F3-P9T and Leucobacter chironomi DSM 19883T. The DNA-DNA hybridization values between the novel strain and the reference strains were lower than the accepted bacterial threshold level of 70 % for species delineation. The DNA G+C content of strain 2C-7T was 70.0 mol%. Based on the data, strain 2C-7T represents a novel species in the genus Leucobacter, for which the name Leucobacter corticis sp. nov. is proposed. The type strain is 2C-7T (=CFCC 11901T=KCTC 39643T).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">28699860</PMID><DateCompleted><Year>2017</Year><Month>09</Month><Day>11</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>11</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN><JournalIssue CitedMedium="Internet"><Volume>67</Volume><Issue>7</Issue><PubDate><Year>2017</Year><Month>Jul</Month></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle>Leucobacter corticis sp. nov., isolated from symptomatic bark of Populus × euramericana canker.</ArticleTitle><Pagination><MedlinePgn>2248-2252</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.001934</ELocationID><Abstract><AbstractText>A Gram-stain-positive, aerobic, non-motile, rod-shaped bacterial strain, designated 2C-7T, was isolated from symptomatic bark of a Populus × euramericana canker. Growth occurred between 10 and 37 °C and between pH 6 and 10, with optimal growth at 30 °C and pH 7.0-8.0. Growth was present under 0-8 % (w/v) salinity conditions (optimum 1-2 %). Growth occurred in the presence of 10 mM chromium (Cr6+). The major fatty acids (≥10 %) of the novel strain were anteiso-C15 : 0, anteiso-C17 : 0 and iso-C16 : 0. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phospholipid, glycolipid and two unknown lipids. The major respiratory quinone was menaquinone MK-11. The cell wall amino acids were 2,4-diaminobutyric acid, alanine, glutamic acid and glycine. Strain 2C-7T was most similar to Leucobacter celer subsp. celer NAL101T (97.2 % 16S rRNA gene sequence similarity), 'Leucobacter kyeonggiensis' F3-P9T (97.1 %) and Leucobacter chromiireducens L-1T (97.1 %). In the phylogenetic tree, the isolate formed a single distinct branch separate from those of L. celer subsp. celer NAL101T, 'L. kyeonggiensis' F3-P9T and Leucobacter chironomi DSM 19883T. The DNA-DNA hybridization values between the novel strain and the reference strains were lower than the accepted bacterial threshold level of 70 % for species delineation. The DNA G+C content of strain 2C-7T was 70.0 mol%. Based on the data, strain 2C-7T represents a novel species in the genus Leucobacter, for which the name Leucobacter corticis sp. nov. is proposed. The type strain is 2C-7T (=CFCC 11901T=KCTC 39643T).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fang</LastName><ForeName>Wei</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Forestry of Bureau Taishan, Taishan 529200, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xie</LastName><ForeName>Shou-Jiang</ForeName><Initials>SJ</Initials><AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Xuqi</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Lai-Fa</ForeName><Initials>LF</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>07</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000613">Aminobutyrates</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D006017">Glycolipids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>11032-49-8</RegistryNumber><NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance></Chemical><Chemical><RegistryNumber>305-62-4</RegistryNumber><NameOfSubstance UI="C005959">2,4-diaminobutyric acid</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000192" MajorTopicYN="N">Actinomycetales</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000613" MajorTopicYN="N">Aminobutyrates</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing 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MajorTopicYN="N">Phospholipids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>7</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>9</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>7</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28699860</ArticleId><ArticleId IdType="doi">10.1099/ijsem.0.001934</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name></noRegion><name sortKey="Fang, Wei" sort="Fang, Wei" uniqKey="Fang W" first="Wei" last="Fang">Wei Fang</name><name sortKey="Fang, Wei" sort="Fang, Wei" uniqKey="Fang W" first="Wei" last="Fang">Wei Fang</name><name sortKey="Wang, Lai Fa" sort="Wang, Lai Fa" uniqKey="Wang L" first="Lai-Fa" last="Wang">Lai-Fa Wang</name><name sortKey="Xie, Shou Jiang" sort="Xie, Shou Jiang" uniqKey="Xie S" first="Shou-Jiang" last="Xie">Shou-Jiang Xie</name><name sortKey="Yang, Xuqi" sort="Yang, Xuqi" uniqKey="Yang X" first="Xuqi" last="Yang">Xuqi Yang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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